~ [ source navigation ] ~ [ diff markup ] ~ [ identifier search ] ~ [ freetext search ] ~ [ file search ] ~

Linux Cross Reference
Tina6/tina-libs/tina/image/img_SeqDef.h

Version: ~
Architecture: ~ [ i386 ] ~ [ alpha ] ~ [ m68k ] ~ [ mips ] ~ [ ppc ] ~ [ sparc ] ~ [ sparc64 ] ~

  1 /**********
  2  * 
  3  * Copyright (c) 2003, Division of Imaging Science and Biomedical Engineering,
  4  * University of Manchester, UK.  All rights reserved.
  5  * 
  6  * Redistribution and use in source and binary forms, with or without modification, 
  7  * are permitted provided that the following conditions are met:
  8  * 
  9  *   . Redistributions of source code must retain the above copyright notice, 
 10  *     this list of conditions and the following disclaimer.
 11  *    
 12  *   . Redistributions in binary form must reproduce the above copyright notice,
 13  *     this list of conditions and the following disclaimer in the documentation 
 14  *     and/or other materials provided with the distribution.
 15  * 
 16  *   . Neither the name of the University of Manchester nor the names of its
 17  *     contributors may be used to endorse or promote products derived from this 
 18  *     software without specific prior written permission.
 19  * 
 20  * 
 21  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
 22  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
 23  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
 24  * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 
 25  * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
 26  * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
 27  * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
 28  * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
 29  * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
 30  * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
 31  * POSSIBILITY OF SUCH DAMAGE.
 32  *
 33  **********
 34  * 
 35  * Program :    TINA
 36  * File    :  $Source: /home/tina/cvs/tina-libs/tina/image/img_SeqDef.h,v $
 37  * Date    :  $Date: 2005/12/20 16:28:01 $
 38  * Version :  $Revision: 1.6 $
 39  * CVS Id  :  $Id: img_SeqDef.h,v 1.6 2005/12/20 16:28:01 matts Exp $
 40  *
 41  * Notes : Sequence structures etc
 42  *
 43  *********
 44 */
 45 
 46 #ifndef TINA_IMG_SEQ_DEF_HDR
 47 #define TINA_IMG_SEQ_DEF_HDR
 48 
 49 #include <tina/sys/sysDef.h>
 50 #include <tina/sys/sysPro.h>
 51 #include <tina/math/mathDef.h>
 52 #include <tina/image/img_GenDef.h>
 53 
 54 
 55 #ifdef __cplusplus
 56 extern "C" {
 57 #endif /* __cplusplus */
 58 
 59 
 60 #define SEQ 1001
 61 
 62 /*
 63   sequence proplist types
 64 */
 65 
 66 #define VOXELS          450
 67 #define TE_DATA                 453
 68 #define PAT_DATA                454
 69   /*mjs added TR_DATA and FLIP_ANGLE_DATA 8/11/05 */
 70 #define TR_DATA         455
 71 #define FLIP_ANGLE_DATA  456
 72 
 73 
 74 #define SLICE(_br_imstack) (_br_imstack)->slice[(_br_imstack)->z]
 75 #define VOI(_br_imstack)   (_br_imstack)->slice[(_br_imstack)->z]->voi[(_br_imstack)->nvoi]
 76 
 77 #define NVOI 6
 78 
 79 typedef struct seq_params
 80 {
 81   Ts_id ts_id;
 82   char *filename;        /* sequence filename */
 83 
 84   int type;              /* ie, edge_rect imrect etc, NOT AIFF, ANLZ etc */
 85 
 86   List *start;           /* pointer to start of ddlist containing sequence imrects */
 87   List *current;         /* pointer to current position in list */ 
 88   List *end;             /* pointer to end of list */
 89 
 90   int offset;            /* number of start image in the sequence (ie, offset from 0) */
 91   int stride;            /* amount sequence is incremented by (normally 1) */
 92 
 93 
 94   float dim[4];          /* dim[0] is xscale, dim[1] is yscale, dim[2] is zscale */
 95                          /* dim[3] is time interval between slices */
 96 
 97   List *props;           /* props list for data such as TE */
 98   int downsample;        /* As stride allows downsampling of the z-axis, this allows downsampling of x and y (normally 1) */
 99 
100 } Sequence;
101 
102 typedef struct various
103 {
104   int      width, height;
105   int      ax, ay;
106   int      sh_dx, sh_dy;
107   float    Sigma, mu;
108   int      Ip, Ib;
109 } Local;
110 
111 typedef struct seqvoi
112 {
113     Spline2 *spline;
114     Tstring *string;
115     int nspline;     /* removed snake stuff MLJS 29/11/00*/
116     int n;
117 } Seqvoi;
118 
119 
120 typedef struct seqslice
121 {
122     Imrect *im;
123     Seqvoi *voi[NVOI];
124     double z;
125 } Seqslice;
126 
127 typedef struct br_imstack
128 {
129     Vartype vtype;
130     int x, lx, ux;
131     int y, ly, uy;
132     int z, lz, uz;
133     int zmark;
134     Seqslice **slice;
135     double zscale;
136     int nvoi;
137   /*struct stats *stats;  snake stuff */
138   /*struct tube *tube;    sagit view stuff */
139 } Br_imstack;
140 
141 
142 
143 #ifdef __cplusplus
144 }
145 #endif /* __cplusplus */
146 
147 #endif /* TINA_IMG_SEQ_DEF_HDR */ 
148 

~ [ source navigation ] ~ [ diff markup ] ~ [ identifier search ] ~ [ freetext search ] ~ [ file search ] ~

This page was automatically generated by the LXR engine.
Visit the LXR main site for more information.